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基于eDNA技术与传统渔具调查方法的万泉河鱼类多样性的比较研究
雷俊1,2, 苏园园1, 尹连政3, 曾若菡4, 黎平1,2, 秦永强5, 蔡杏伟6, 刁晓平7
1.海南大学生态学院 海南 海口 570228;2.海南省热带林业资源监测与应用重点实验室 海南 海口 570228;3.海南大学生态学院 海南 海口 570229;4.海南大学生态学院 海南 海口 570230;5.海南师范大学生态与环境学院 海南 海口 570228;6.海南省海洋与渔业科学院淡水渔业研究所 海南 海口 571924;7.海南大学南海海洋资源利用国家 重点实验室 海南 海口 570228
摘要:
万泉河是海南岛重要的河流之一,拥有丰富的鱼类资源。为探究万泉河流域鱼类多样性及群落结构特征,本研究采用环境DNA (environmental DNA, eDNA)技术,结合传统渔具调查方法进行对比分析,探讨eDNA技术与传统渔具调查方法在鱼类监测方面的优势。结果显示,通过eDNA技术共检测到6目32科65属76种鱼类,传统渔具调查方法共获得4目14科44属44种鱼类。两种方法共同检测到的鱼类有19种,总体上eDNA在所有采样点检测出的鱼类物种均比传统调查方法多。两种方法检测的鱼类中均以鲤形目(Cypriniformes)为主,其次是鲈形目(Perciformes)和鲇形目(Siluriformes)。本研究结果表明,eDNA技术是对万泉河传统渔具调查方法的重要补充,可为万泉河鱼类资源保护提供基础数据和技术参考。
关键词:  环境DNA  万泉河  鱼类多样性
DOI:10.19663/j.issn2095-9869.20240924001
分类号:
基金项目:海南省热带林业资源监测与应用重点实验室开放基金(SZDSYS2024-004)资助
Comparative study of fish diversity in Wanquan River based on environmental technology and traditional fishing gear survey methods
LEI Jun1,2, SU Yuanyuan1, YIN Lianzheng3, ZENG Ruohan4, LI Ping1,2, QIN Yongqiang5, CAI Xingwei6, DIAO Xiaoping7
1.College of Ecology, Hainan University, Haikou 570228, China;2.Hainan Key Laboratory of Tropical Forestry Resources Monitoring and Application, Haikou 570228, China;3.College of Ecology, Hainan University, Haikou 570229, China;4.College of Ecology, Hainan University, Haikou 570230, China;5.College of Ecology and Environment, Hainan Normal University, Haikou 570228, China;6.Institute of Freshwater Fisheries, Hainan Academy of Oceanography and Fisheries, Haikou 571924, China;7.State Key Laboratory of South China Sea Marine Resources Utilization, Hainan University, Haikou 570228, China
Abstract:
Fish play an important role in maintaining aquatic ecosystems and directly affect the health and stability of aquatic ecosystems. The rapid economic development of the Wanquan River basin has seriously affected the ecological function of fish in the basin owing to human activities such as dam dredging and highways. Therefore, long-term surveys and monitoring of fish diversity are urgently required to determine the current status of fish resources in the basin and formulate corresponding conservation measures. Traditional fish surveys primarily use gear fishing methods, such as gillnets, purse seines, and ground cage nets. However, traditional fishing gear survey methods have limitations, particularly because different gears are selective for fish species and individual sizes. Catching fish species that are small in number and elusive is challenging, making it difficult to accurately and comprehensively monitor the fish diversity in the survey area. In addition, the restriction of the fishing moratorium further increases the difficulty of traditional operational surveys. Therefore, a rapid and effective monitoring method is urgently needed to study the fish resources of the Wanquan River. Environmental DNA (eDNA) technology involves analyzing biological communities by enriching DNA retained in the environment and using high-throughput sequencing technology. This method offers several advantages, including minimal environmental disturbance, time and effort efficiency, and allowing rapid monitoring of fish diversity and spatial distribution. eDNA technology has been widely used in biodiversity monitoring, population distribution, biomass assessment, and feeding analysis. To investigate the fish diversity and community structure in the Wanquan River Basin, this study used eDNA technology in combination with the traditional fishing gear survey method for comparative analysis and explored the advantages of the two methods in fish monitoring. The results showed that 76 species of fish in six orders, 32 families, and 65 genera were detected by eDNA technology, whereas 44 species in four orders, 14 families, and 44 genera were detected by the traditional fishing gear survey method. Overall, the eDNA method detected more fish species than the traditional survey method at all sampling sites. The dominant fish species detected by both methods were Carpiformes, followed by Perchiformes and Siluriformes. In terms of the composition of dominant species, 22 dominant species of fishes in Wanquan River were detected by eDNA technology, seven dominant species were detected by the traditional survey method and two dominant species were detected by the two methods, which were Coptodon zillii and Toxabramis houdemeri. Alpha-diversity analyses indicated that the fish species richness detected by the eDNA method was significantly higher than that of the traditional method, whereas the evenness was higher than that of the traditional method. The principal coordinate analysis (PCoA) results revealed that the fish composition at the HP sampling site was less similar to that of the DLQ, JJ, PL, and DBQ sampling sites, with fewer common species. Spearman's correlation analysis showed that eDNA technology and traditional survey methods had a significant positive correlation (P<0.05) between species sequence abundance and fish quality. This preliminary exploration of the fish diversity of Wanquan River using both the eDNA and traditional survey methods establishes a particular foundation for the application of eDNA in monitoring the fish diversity of Wanquan River and also serves as a reference for the protection of the fish management of Wanquan River.
Key words:  Environmental DNA  Wanquan River  Fish diversity