The compositions and contents of amino acids and fatty acids of Enteromorpha prolifera were determined by automatic amino acid analyzer and gas chromatograph mass spectrometry (GC+MS). Eighteen amino acids were found in the samples and total amino acids (TAA) was 8.78%. Human essential amino acids (TAA) covered 35.08% of the total amino acid. Among the 19 kinds of fatty acids of C12~C24, the content of total unsaturated fatty acid was 65.78%, which were mainly high polyunsaturated fatty acid with a high percentage of C12 and C24. The content of ω-3 unsaturated fatty acid was 29.68% of all fatty acids, and the content of characteristic fatty acid of chloraphyta—all cis 6,9,12 Octadecatrienoic was 18.70%.