文章摘要
基于转录组学探究微塑料与铜暴露对中华绒螯蟹肠道基因表达的影响
Transcriptomics-based investigation of the effects of microplastics and copper exposure on intestinal gene expression in Eriocheir sinensis
投稿时间:2024-07-23  修订日期:2024-09-05
DOI:
中文关键词: 中华绒螯蟹  微塑料    转录组  能量代谢  免疫
英文关键词: Eriocheir sinensis  microplastics  copper  transcriptome  energy metabolism  immunity
基金项目:上海市农委中华绒螯蟹专项研究
作者单位邮编
徐建 安徽师范大学生态与环境学院 200090
冯广朋* 安徽师范大学
中国水产科学研究院东海水产研究所长江口水生生物监测与保护联合实验室 
200090
严云志 安徽师范大学生态与环境学院 
陈锦辉 长江口水生生物监测与保护联合实验室 
吴建辉 长江口水生生物监测与保护联合实验室 
杨祖长 中国水产科学研究院东海水产研究所上海长江口渔业资源增殖和生态修复工程技术研究中心 
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中文摘要:
      微塑料(microplastics,MPs)是常见的污染物,而硫酸铜是水产养殖中常用的消毒剂,水体中的铜离子(Cu2+)可被MPs吸附。为探究MPs和Cu2+单一及联合暴露对中华绒螯蟹肠道组织的影响机制,本研究选择0.4 mg/L MPs和0.1 mg/L Cu2+作为实验浓度,设置4个处理组:0.4 mg/L MPs暴露组(M组)、0.1 mg/L Cu2+暴露组(C组)、0.4 mg/L MPs + 0.1 mg/L Cu2+联合暴露组(MC组)和空白对照组(D组),探究MPs和Cu2+单一及联合暴露21 d后对中华绒螯蟹肠道的影响机制。采用RNA-Seq技术对肠道开展转录组测序,筛选差异表达基因(DEGs)进行KEGG富集分析等生物信息学分析。结果表明,与对照组相比,M组包括1650个上调DEGs和1874个下调DEGs;C组包括3797个上调DEGs和1073个下调DEGs;MC组包括1492个上调DEGs和1305个下调DEGs。与抗氧化、免疫和能量代谢相关的DEGs,包括过氧化氢酶(cat)、三结构域蛋白(trim)、Toll样受体(tlr)、细胞色素P450(cyp450)、碳酸酐酶(ca)等在M vs. D、C vs. D、MC vs. D中变化显著。KEGG富集分析显示,DEGs主要富集于氧化磷酸化、谷胱甘肽代谢、细胞色素P450对异生素的代谢等通路。结果揭示,MPs与Cu2+单一及联合暴露导致中华绒螯蟹的抗氧化、免疫和能量代谢系统失衡,MPs和Cu2+具有协同毒性作用,研究结果为阐明MPs和Cu2+暴露对中华绒螯蟹的影响机制提供了参考。
英文摘要:
      Microplastics (MPs) are particles smaller than 5 mm and are prevalent environmental pollutants. Over 80% of marine litter is composed of plastic waste, which reaches oceans via atmospheric transport, surface runoff, and human activities such as shipping and fishing. These plastics degrade into MPs, which possess a "carrier effect", enabling them to adsorb contaminants like heavy metals. Copper sulfate (CuSO4), frequently used in aquaculture to manage diseases and cyanobacterial blooms, can introduce excessive copper ions (Cu2+) into aquatic environments, adversely affecting water quality and aquatic life. The Chinese mitten crab (Eriocheir sinensis) is a vital species in China's freshwater aquaculture. Annually, mature E. sinensis migrate to the Yangtze River estuary for reproduction. However, the estuarine ecosystem is increasingly disturbed, making mitten crabs vulnerable to MPs and heavy metal contamination. The intestinal tract, which directly interacts with ingested pollutants, is particularly susceptible. Previous studies have examined the effects of MPs or Cu2+ on E. sinensis independently, but the combined impact remains underexplored. In this study, 0.4 mg/L MPs and 0.1 mg/L Cu2+ were selected as the experimental concentrations, and four treatment groups were set up: 0.4 mg/L MPs-exposed group (Group M), 0.1 mg/L Cu2+-exposed group (Group C), 0.4 mg/L MPs + 0.1 mg/L Cu2+ combined-exposed group (Group MC), and blank control group (Group D) to investigate the effects of MPs and Cu2+ on the intestinal tract of E. sinensis after 21 days of single and combined exposure. After 21 days, transcriptome sequencing of intestinal tissues was conducted using Illumina's high-throughput platform, generating 197,908,972 raw reads. Post-quality filtering yielded clean reads across the four groups, with 94.71%-95.48% Q30 scores. 109,644 transcripts were identified, with 68,005 exceeding 1800 bp in length. Differential expression analysis revealed 1,650 up-regulated and 1,874 down-regulated DEGs in Group M, 3,797 up-regulated and 1,073 down-regulated DEGs in Group C, and 1,492 up-regulated and 1,305 down-regulated DEGs in Group MC. Notably, DEGs associated with antioxidant defense, immune response, and energy metabolism exhibited significant differences among comparison groups. In particular, catalase (cat) and peroxiredoxin (prdx) were down-regulated, while trim, Toll-like receptor (tlr), and complement component 1 (c1) were up-regulated in the immune system. Cytochrome P450 (cyp450) showed significant down-regulation across treatment groups. Energy metabolism DEGs also varied, with carbonic anhydrase (ca) up-regulated and vesicular adenosine triphosphatase (v-atpase) down-regulated. KEGG pathway enrichment indicated that, in M vs. D, 1,594 DEGs in the intestine were mapped to 333 pathways. Among these, 34 pathways were significantly enriched (p < 0.05), including oxidative phosphorylation and glutathione metabolism. In C vs. D, 2,445 DEGs in the intestine were mapped to 340 pathways. Among these, 9 pathways significantly enriched (p < 0.05), primarily involving DNA replication and ABC transporters. In MC vs. D groups, 1,198 DEGs in the intestine were mapped to 326 pathways. Among these, 14 pathways were significantly enriched (p < 0.05), including the complement and coagulation cascades, metabolism of xenobiotics by cytochrome P450, among others. The DEGs were predominantly enriched in pathways related to oxidative phosphorylation, glutathione metabolism, metabolism of xenobiotics by cytochrome P450, and ABC transporters. The findings indicate that both individual and combined exposures to MPs and Cu2+ disrupted the antioxidant, immune, and energy metabolism systems in E. sinensis. The glutathione metabolism pathway was particularly inhibited in the M, C, and MC groups. MPs and Cu2+ may impact the expression of cytochrome P450 and related genes (cyp450, ugt), potentially compromising the immune function of E. sinensis. Notably, ugt was significantly upregulated in M vs. D and downregulated in MC vs. D. The number of DEGs linked to the oxidative phosphorylation pathway varied across comparisons, with 41 DEGs in M vs. D, 7 in C vs. D, and 7 in MC vs. D being enriched in this pathway. MPs might affect the oxidative phosphorylation pathway by inhibiting the expression of cox and atpase genes. In contrast, exposure to Cu2+ alone, as well as co-exposure with MPs, had a comparatively smaller impact on this pathway. The mechanisms underlying the stress responses of E. sinensis to MPs and Cu2+ exposure are further elucidated in this study.
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